Package: o2geosocial
Type: Package
Title: Reconstruction of Transmission Chains from Surveillance Data
Version: 1.1.3
URL: https://github.com/alxsrobert/o2geosocial
Encoding: UTF-8
Authors@R: c(person("Alexis", "Robert", email = "alexis.robert@lshtm.ac.uk", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-4516-2965")),
		    person("Sebastian", "Funk", email = "sebastian.funk@lshtm.ac.uk", role = c("aut"), comment = c(ORCID = "0000-0002-2842-3406")),
		    person("Adam J", "Kucharski", email = "adam.kucharski@lshtm.ac.uk", role = c("aut"), comment = c(ORCID = "0000-0001-8814-9421")),
		    person("Thibaut", "Jombart", role = c("ctb")))
Maintainer: Alexis Robert <alexis.robert@lshtm.ac.uk>
Description: Bayesian reconstruction of who infected whom during past
        outbreaks using routinely-collected surveillance data.
        Inference of transmission trees using genotype, age specific
        social contacts, distance between cases and onset dates of the
        reported cases. (Robert A, Kucharski AJ, Gastanaduy PA, Paul P,
        Funk S. (2020) <doi:10.1098/rsif.2020.0084>).
License: MIT + file LICENSE
Imports: Rcpp, methods, stats, grDevices, geosphere, ggplot2,
        visNetwork, data.table, outbreaker2
LazyData: true
Depends: R(>= 3.5.0)
LinkingTo: Rcpp
RoxygenNote: 7.3.1
Suggests: testthat, tigris, sf, knitr, socialmixr, rmarkdown
VignetteBuilder: knitr
BugReports: https://github.com/alxsrobert/o2geosocial/issues
Config/pak/sysreqs: cmake make libuv1-dev
Repository: https://alxsrobert.r-universe.dev
Date/Publication: 2024-06-21 17:06:11 UTC
RemoteUrl: https://github.com/alxsrobert/o2geosocial
RemoteRef: HEAD
RemoteSha: 1c3c70957763464ec8cc686974cf50bdb2aa2eae
NeedsCompilation: yes
Packaged: 2026-06-20 06:37:20 UTC; root
Author: Alexis Robert [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-4516-2965>),
  Sebastian Funk [aut] (ORCID: <https://orcid.org/0000-0002-2842-3406>),
  Adam J Kucharski [aut] (ORCID: <https://orcid.org/0000-0001-8814-9421>),
  Thibaut Jombart [ctb]